The panelists on The Project extensively criticised the film during their interview of Ms Jaye.
'I have never been treated like I have on Sunrise and The Project,' Ms Jaye said.
'A lot of people don't realise my interview with The Project was heavily edited down. The full interview was very hostile....I definitely felt ambushed.'
In the interview with Sunrise, host Andrew O'Keefe admitted to not watching the movie, claiming her publicist didn't send the link through.
Ms Jaye said a link was sent a few times as early as a month before the interview.
She said she was deeply disappointed in how she had been treated.
Andrew Bolt hit out at the network's, apologising to Ms Jaye for coming into an 'intolerant country like Australia'.
'Something serious has gone wrong in our culture and I apologise,' Mr Bolt said.
'It didn't used to be that way. I'm very sorry you've run smack into it.'
The documentary was banned by several Australian cinemas with opponents of the film threatening protests.
She said the journey was a complicated and complex one in order to try a find a 'middle ground'.
'There's obvious silence tactics happening in Australia. I urge people to watch it for themselves.'
Red Pill is the second top rating movie on YouTube in Australia.